A curated catalogue of human genomic structural variation




Variant Details

Variant: essv71373



Internal ID11013388
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:46752934..46809490hg38UCSC Ensembl
Innerchr3:46794424..46850980hg19UCSC Ensembl
Innerchr3:46769428..46825984hg18UCSC Ensembl
Cytoband3p21.31
Allele length
AssemblyAllele length
hg3856557
hg1956557
hg1856557
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv17051
Supporting Variants
SamplesNA18916
Known Genes
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv71373
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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