A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7030630



Internal ID10365148
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:7177225..7202707hg38UCSC Ensembl
Innerchr5:7177338..7202820hg19UCSC Ensembl
Innerchr5:7230338..7255820hg18UCSC Ensembl
Cytoband5p15.31
Allele length
AssemblyAllele length
hg3825483
hg1925483
hg1825483
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2763886
Supporting Variants
SamplesSW_1127
Known Genes
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7030630
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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