A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7028389



Internal ID10013599
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:195656271..195729085hg38UCSC Ensembl
Innerchr3:195383142..195455956hg19UCSC Ensembl
Innerchr3:196868323..196941627hg18UCSC Ensembl
Cytoband3q29
Allele length
AssemblyAllele length
hg3872815
hg1972815
hg1873305
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2763776
Supporting Variants
SamplesSW_0828
Known GenesMIR570, MUC20, SDHAP2
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7028389
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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