A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7028024



Internal ID10372318
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:71633478..71655902hg38UCSC Ensembl
Innerchr1:72099161..72121585hg19UCSC Ensembl
Innerchr1:71871749..71894173hg18UCSC Ensembl
Cytoband1p31.1
Allele length
AssemblyAllele length
hg3822425
hg1922425
hg1822425
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2763317
Supporting Variants
SamplesSW_1437
Known GenesNEGR1
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7028024
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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