A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7027406



Internal ID10374105
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:75377956..75496021hg38UCSC Ensembl
Innerchr3:75427107..75545172hg19UCSC Ensembl
Innerchr3:75509797..75627862hg18UCSC Ensembl
Cytoband3p12.3
Allele length
AssemblyAllele length
hg38118066
hg19118066
hg18118066
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2763755
Supporting Variants
SamplesSW_1571
Known GenesFAM86DP
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7027406
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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