A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7025902



Internal ID10335833
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:54218406..54237443hg38UCSC Ensembl
Innerchr19:54722275..54741319hg19UCSC Ensembl
Innerchr19:59414087..59433131hg18UCSC Ensembl
Cytoband19q13.42
Allele length
AssemblyAllele length
hg3819038
hg1919045
hg1819045
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2760520
Supporting Variants
SamplesRW_0113
Known GenesLILRA6, LILRB3
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7025902
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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