A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7025618



Internal ID9994748
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:40832930..40865040hg38UCSC Ensembl
Innerchr19:41338835..41370945hg19UCSC Ensembl
Innerchr19:46030675..46062785hg18UCSC Ensembl
Cytoband19q13.2
Allele length
AssemblyAllele length
hg3832111
hg1932111
hg1832111
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2760509
Supporting Variants
SamplesRW_0246
Known GenesCYP2A6
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7025618
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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