A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7025281



Internal ID9987771
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr18:79224569..79439105hg38UCSC Ensembl
Innerchr18:76984569..77199105hg19UCSC Ensembl
Innerchr18:75085557..75300093hg18UCSC Ensembl
Cytoband18q23
Allele length
AssemblyAllele length
hg38214537
hg19214537
hg18214537
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2760476
Supporting Variants
SamplesRW_0075
Known GenesATP9B, NFATC1
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7025281
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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