A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7021286



Internal ID10333357
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr13:31956878..31964286hg38UCSC Ensembl
Innerchr13:32531015..32538423hg19UCSC Ensembl
Innerchr13:31429015..31436423hg18UCSC Ensembl
Cytoband13q13.1
Allele length
AssemblyAllele length
hg387409
hg197409
hg187409
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2760306
Supporting Variants
SamplesRW_0046
Known GenesEEF1DP3
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7021286
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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