A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7017997



Internal ID10335862
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:104601552..104607755hg38UCSC Ensembl
Innerchr9:107363833..107370036hg19UCSC Ensembl
Innerchr9:106403654..106409857hg18UCSC Ensembl
Cytoband9q31.1
Allele length
AssemblyAllele length
hg386204
hg196204
hg186204
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2761260
Supporting Variants
SamplesRW_0114
Known GenesOR13C2
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7017997
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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