A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7015963



Internal ID10001641
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr8:7439818..8008640hg38UCSC Ensembl
Innerchr8:7297340..7866162hg19UCSC Ensembl
Innerchr8:7284750..7903572hg18UCSC Ensembl
Cytoband8p23.1
Allele length
AssemblyAllele length
hg38568823
hg19568823
hg18618823
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2761169
Supporting Variants
SamplesRW_0589
Known GenesDEFB103A, DEFB103B, DEFB104A, DEFB104B, DEFB105A, DEFB105B, DEFB106A, DEFB106B, DEFB107A, DEFB107B, DEFB109P1B, DEFB4A, FAM66E, FAM90A10P, FAM90A7P, PRR23D1, PRR23D2, SPAG11A, SPAG11B, USP17L3, USP17L8, ZNF705B
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7015963
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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