A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7013660



Internal ID10342671
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:52764971..52805646hg38UCSC Ensembl
Innerchr6:52629769..52670444hg19UCSC Ensembl
Innerchr6:52737728..52778403hg18UCSC Ensembl
Cytoband6p12.1
Allele length
AssemblyAllele length
hg3840676
hg1940676
hg1840676
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2760993
Supporting Variants
SamplesRW_0275
Known GenesGSTA1
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7013660
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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