A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7013377



Internal ID10349638
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:176038483..176241574hg38UCSC Ensembl
Innerchr5:175465486..175668577hg19UCSC Ensembl
Innerchr5:175398092..175601183hg18UCSC Ensembl
Cytoband5q35.2
Allele length
AssemblyAllele length
hg38203092
hg19203092
hg18203092
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2760985
Supporting Variants
SamplesRW_0619
Known GenesFAM153B, LOC100507387, LOC100996385, LOC643201, SIMC1
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7013377
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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