A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7011866



Internal ID10001660
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:143920939..143999755hg38UCSC Ensembl
Innerchr4:144842092..144920908hg19UCSC Ensembl
Innerchr4:145061542..145140358hg18UCSC Ensembl
Cytoband4q31.21
Allele length
AssemblyAllele length
hg3878817
hg1978817
hg1878817
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2760865
Supporting Variants
SamplesRW_0589
Known GenesGYPB
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7011866
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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