A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7010989



Internal ID10013396
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:32779620..32914293hg38UCSC Ensembl
Innerchr2:33004687..33139360hg19UCSC Ensembl
Innerchr2:32858191..32992864hg18UCSC Ensembl
Cytoband2p22.3
Allele length
AssemblyAllele length
hg38134674
hg19134674
hg18134674
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2763243
Supporting Variants
SamplesSW_0816
Known GenesLINC00486, TTC27
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7010989
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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