A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7009220



Internal ID10344178
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:85471765..85528083hg38UCSC Ensembl
Innerchr3:85520915..85577233hg19UCSC Ensembl
Innerchr3:85603605..85659923hg18UCSC Ensembl
Cytoband3p12.1
Allele length
AssemblyAllele length
hg3856319
hg1956319
hg1856319
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2762338
Supporting Variants
SamplesRW_0328
Known GenesCADM2
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7009220
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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