A curated catalogue of human genomic structural variation




Variant Details

Variant: essv70090



Internal ID11012106
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:1365188..1377038hg38UCSC Ensembl
InnerchrX:1484081..1495931hg19UCSC Ensembl
InnerchrX:1444081..1455931hg18UCSC Ensembl
CytobandXp22.33
Allele length
AssemblyAllele length
hg3811851
hg1911851
hg1811851
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv11725
Supporting Variants
SamplesNA18916
Known GenesIL3RA
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv70090
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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