A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7008847



Internal ID10001738
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:4079539..4118040hg38UCSC Ensembl
Innerchr3:4121223..4159724hg19UCSC Ensembl
Innerchr3:4096223..4134724hg18UCSC Ensembl
Cytoband3p26.1
Allele length
AssemblyAllele length
hg3838502
hg1938502
hg1838502
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2760789
Supporting Variants
SamplesRW_0591
Known Genes
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7008847
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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