A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7008507



Internal ID10343788
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:202421699..202447478hg38UCSC Ensembl
Innerchr2:203286422..203312201hg19UCSC Ensembl
Innerchr2:202994667..203020446hg18UCSC Ensembl
Cytoband2q33.1
Allele length
AssemblyAllele length
hg3825780
hg1925780
hg1825780
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2760604
Supporting Variants
SamplesRW_0315
Known GenesBMPR2
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7008507
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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