A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7007653



Internal ID9989131
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:55687655..55711612hg38UCSC Ensembl
Innerchr2:55914790..55938747hg19UCSC Ensembl
Innerchr2:55768294..55792251hg18UCSC Ensembl
Cytoband2p16.1
Allele length
AssemblyAllele length
hg3823958
hg1923958
hg1823958
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2760573
Supporting Variants
SamplesRW_0113
Known GenesPNPT1
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7007653
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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