A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7004845



Internal ID10353829
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:42550874..42581184hg38UCSC Ensembl
Innerchr22:42946880..42977190hg19UCSC Ensembl
Innerchr22:41276824..41307134hg18UCSC Ensembl
Cytoband22q13.2
Allele length
AssemblyAllele length
hg3830311
hg1930311
hg1830311
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2763695
Supporting Variants
SamplesSW_0144
Known GenesRRP7B, SERHL2
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7004845
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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