A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7004260



Internal ID10019189
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr21:10458564..10591170hg38UCSC Ensembl
Innerchr21:10921287..11053893hg19UCSC Ensembl
Innerchr21:9943158..10075764hg18UCSC Ensembl
Cytoband21p11.1
Allele length
AssemblyAllele length
hg38132607
hg19132607
hg18132607
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2763681
Supporting Variants
SamplesSW_1157
Known GenesBAGE2, BAGE3, BAGE4, BAGE5, TPTE
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7004260
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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