A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7003431



Internal ID10010818
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:42751065..42850300hg38UCSC Ensembl
Innerchr19:43255217..43354452hg19UCSC Ensembl
Innerchr19:47947057..48046292hg18UCSC Ensembl
Cytoband19q13.2
Allele length
AssemblyAllele length
hg3899236
hg1999236
hg1899236
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2763121
Supporting Variants
SamplesSW_0607
Known GenesLOC100289650, PSG10P, PSG8
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7003431
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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