A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7002305



Internal ID10026822
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:46088437..46358088hg38UCSC Ensembl
Innerchr17:44165803..44435454hg19UCSC Ensembl
Innerchr17:41521621..41791196hg18UCSC Ensembl
Cytoband17q21.31
Allele length
AssemblyAllele length
hg38269652
hg19269652
hg18269576
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2762433
Supporting Variants
SamplesSW_1504
Known GenesARL17A, ARL17B, KANSL1, KANSL1-AS1, LOC644172, LRRC37A
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7002305
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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