A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7001920



Internal ID10026535
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:36109735..36258784hg38UCSC Ensembl
Innerchr17:34437128..34586294hg19UCSC Ensembl
Innerchr17:31461241..31610407hg18UCSC Ensembl
Cytoband17q12
Allele length
AssemblyAllele length
hg38149050
hg19149167
hg18149167
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2762388
Supporting Variants
SamplesSW_1477
Known GenesCCL3L1, CCL3L3, CCL4L1, CCL4L2, TBC1D3B, TBC1D3H
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7001920
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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