A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7001829



Internal ID10364574
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:18483309..18571332hg38UCSC Ensembl
Innerchr17:18386623..18474646hg19UCSC Ensembl
Innerchr17:18327348..18415371hg18UCSC Ensembl
Cytoband17p11.2
Allele length
AssemblyAllele length
hg3888024
hg1988024
hg1888024
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2762610
Supporting Variants
SamplesSW_1109
Known GenesCCDC144B, FAM106A, LGALS9C, USP32P2
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7001829
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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