A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7001796



Internal ID10359166
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:18455632..18596943hg38UCSC Ensembl
Innerchr17:18358946..18500256hg19UCSC Ensembl
Innerchr17:18299671..18440981hg18UCSC Ensembl
Cytoband17p11.2
Allele length
AssemblyAllele length
hg38141312
hg19141311
hg18141311
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2762610
Supporting Variants
SamplesSW_0757
Known GenesCCDC144B, FAM106A, LGALS9C, USP32P2
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7001796
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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