A curated catalogue of human genomic structural variation




Variant Details

Variant: essv7001673



Internal ID10364295
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:18452078..18565883hg38UCSC Ensembl
Innerchr17:18355392..18469197hg19UCSC Ensembl
Innerchr17:18296117..18409922hg18UCSC Ensembl
Cytoband17p11.2
Allele length
AssemblyAllele length
hg38113806
hg19113806
hg18113806
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2762610
Supporting Variants
SamplesSW_1101
Known GenesCCDC144B, FAM106A, LGALS9C, USP32P2
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv7001673
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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