A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6999810



Internal ID10373894
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:25171567..25261432hg38UCSC Ensembl
Innerchr15:25416714..25506579hg19UCSC Ensembl
Innerchr15:22967807..23057672hg18UCSC Ensembl
Cytoband15q11.2
Allele length
AssemblyAllele length
hg3889866
hg1989866
hg1889866
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2761832
Supporting Variants
SamplesSW_1535
Known GenesPWAR4, SNORD115-10, SNORD115-11, SNORD115-12, SNORD115-13, SNORD115-14, SNORD115-15, SNORD115-16, SNORD115-17, SNORD115-18, SNORD115-19, SNORD115-2, SNORD115-20, SNORD115-21, SNORD115-22, SNORD115-23, SNORD115-24, SNORD115-25, SNORD115-26, SNORD115-27, SNORD115-28, SNORD115-29, SNORD115-3, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-34, SNORD115-35, SNORD115-36, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-4, SNORD115-40, SNORD115-41, SNORD115-42, SNORD115-43, SNORD115-44, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv6999810
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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