A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6999809



Internal ID10364303
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:25171567..25185096hg38UCSC Ensembl
Innerchr15:25416714..25430243hg19UCSC Ensembl
Innerchr15:22967807..22981336hg18UCSC Ensembl
Cytoband15q11.2
Allele length
AssemblyAllele length
hg3813530
hg1913530
hg1813530
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2761832
Supporting Variants
SamplesSW_1102
Known GenesSNORD115-10, SNORD115-12, SNORD115-2, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv6999809
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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