A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6997455



Internal ID10353081
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:86022158..86353948hg38UCSC Ensembl
Innerchr12:86415936..86747726hg19UCSC Ensembl
Innerchr12:84940067..85271857hg18UCSC Ensembl
Cytoband12q21.31
Allele length
AssemblyAllele length
hg38331791
hg19331791
hg18331791
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2761759
Supporting Variants
SamplesSW_0086
Known GenesMGAT4C
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv6997455
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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