A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6997338



Internal ID10022986
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:33146857..33162724hg38UCSC Ensembl
Innerchr12:33299791..33315658hg19UCSC Ensembl
Innerchr12:33191058..33206925hg18UCSC Ensembl
Cytoband12p11.1
Allele length
AssemblyAllele length
hg3815868
hg1915868
hg1815868
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2761043
Supporting Variants
SamplesSW_1318
Known Genes
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv6997338
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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