A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6996563



Internal ID10355403
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:7842191..7952487hg38UCSC Ensembl
Innerchr12:7994787..8105083hg19UCSC Ensembl
Innerchr12:7886054..7996350hg18UCSC Ensembl
Cytoband12p13.31
Allele length
AssemblyAllele length
hg38110297
hg19110297
hg18110297
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2761054
Supporting Variants
SamplesSW_0240
Known GenesSLC2A14, SLC2A3
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv6996563
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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