A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6996099



Internal ID10367646
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:78883702..78932297hg38UCSC Ensembl
Innerchr11:78594747..78643342hg19UCSC Ensembl
Innerchr11:78272395..78320990hg18UCSC Ensembl
Cytoband11q14.1
Allele length
AssemblyAllele length
hg3848596
hg1948596
hg1848596
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2761683
Supporting Variants
SamplesSW_1231
Known GenesTENM4
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv6996099
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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