A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6996080



Internal ID10022092
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:58000816..58043414hg38UCSC Ensembl
Innerchr11:57768288..57810886hg19UCSC Ensembl
Innerchr11:57524864..57567462hg18UCSC Ensembl
Cytoband11q12.1
Allele length
AssemblyAllele length
hg3842599
hg1942599
hg1842599
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2761678
Supporting Variants
SamplesSW_1281
Known GenesOR6Q1, OR9Q1
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv6996080
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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