A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6994339



Internal ID10370254
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:94095453..94113300hg38UCSC Ensembl
Innerchr9:96857735..96875582hg19UCSC Ensembl
Innerchr9:95897556..95915403hg18UCSC Ensembl
Cytoband9q22.32
Allele length
AssemblyAllele length
hg3817848
hg1917848
hg1817848
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2761543
Supporting Variants
SamplesSW_1348
Known GenesPTPDC1
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv6994339
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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