A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6993859



Internal ID10367785
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:28077412..28104447hg38UCSC Ensembl
Innerchr9:28077410..28104445hg19UCSC Ensembl
Innerchr9:28067410..28094445hg18UCSC Ensembl
Cytoband9p21.1
Allele length
AssemblyAllele length
hg3827036
hg1927036
hg1827036
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2761513
Supporting Variants
SamplesSW_1236
Known GenesLINGO2
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv6993859
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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