A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6993090



Internal ID10005345
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:109690352..109697556hg38UCSC Ensembl
Innerchr1:110232974..110240178hg19UCSC Ensembl
Innerchr1:110034497..110041701hg18UCSC Ensembl
Cytoband1p13.3
Allele length
AssemblyAllele length
hg387205
hg197205
hg187205
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2763824
Supporting Variants
SamplesSW_0021
Known GenesGSTM1
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv6993090
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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