A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6992420



Internal ID10371402
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr8:12019686..12709141hg38UCSC Ensembl
Innerchr8:11877195..12566650hg19UCSC Ensembl
Innerchr8:11914604..12611021hg18UCSC Ensembl
Cytoband8p23.1
Allele length
AssemblyAllele length
hg38689456
hg19689456
hg18696418
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2764095
Supporting Variants
SamplesSW_1404
Known GenesDEFB109P1, DEFB130, FAM66A, FAM66D, FAM86B1, FAM86B2, FAM90A25P, FAM90A2P, LOC100133267, LOC100506990, LOC392196, LOC649352, LOC729732, USP17L2, USP17L7, ZNF705D
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv6992420
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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