A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6991937



Internal ID10361099
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:144230714..144354138hg38UCSC Ensembl
Innerchr7:143927807..144051231hg19UCSC Ensembl
Innerchr7:143558740..143682164hg18UCSC Ensembl
Cytoband7q35
Allele length
AssemblyAllele length
hg38123425
hg19123425
hg18123425
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2764030
Supporting Variants
SamplesSW_0862
Known GenesARHGEF34P, CTAGE4, CTAGE8, OR2A1, OR2A20P, OR2A42, OR2A7, OR2A9P, RNU6-57P
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)essv6991937
Frequency
Sample Size1109
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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