A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6956796



Internal ID9718802
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:177396475..177396593hg38UCSC Ensembl
Outerchr5:176823476..176823594hg19UCSC Ensembl
Cytoband5q35.3
Allele length
AssemblyAllele length
hg38119
hg19119
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2731189, esv2731190
Supporting Variants
SamplesSSM026
Known GenesSLC34A1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6956796
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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