A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6951097



Internal ID9713798
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:11914254..12871920hg38UCSC Ensembl
Outerchr3:11955728..12913419hg19UCSC Ensembl
Cytoband3p25.2
Allele length
AssemblyAllele length
hg38957667
hg19957692
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2724925
Supporting Variants
SamplesSSM025
Known GenesC3orf83, CAND2, MKRN2, PPARG, RAF1, RPL32, SNORA7A, SYN2, TIMP4, TMEM40, TSEN2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6951097
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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