A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6938039



Internal ID9699594
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr2:96472642..96793443hg38UCSC Ensembl
Outerchr2:97138379..97459180hg19UCSC Ensembl
Cytoband2q11.2
Allele length
AssemblyAllele length
hg38320802
hg19320802
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2720400, esv2720413, esv2720404
Supporting Variants
SamplesSSM022
Known GenesARID5A, CNNM4, FER1L5, KANSL3, LMAN2L, NEURL3
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6938039
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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