A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6932972



Internal ID10041354
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:39638082..39692368hg38UCSC Ensembl
Outerchr19:40128722..40183008hg19UCSC Ensembl
Cytoband19q13.2
Allele length
AssemblyAllele length
hg3854287
hg1954287
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2718554
Supporting Variants
SamplesSSM020
Known GenesLGALS16, LGALS17A, LOC100129935
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6932972
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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