A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6889598



Internal ID9986237
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:32662188..32758927hg38UCSC Ensembl
Outerchr6:32629965..32726704hg19UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg3896740
hg1996740
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2731866, esv2731868, esv2731864
Supporting Variants
SamplesSSM002
Known GenesHLA-DQA2, HLA-DQB1, HLA-DQB2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6889598
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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