A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6888671



Internal ID9934146
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr18:79473533..79473676hg38UCSC Ensembl
Outerchr18:77233533..77233676hg19UCSC Ensembl
Cytoband18q23
Allele length
AssemblyAllele length
hg38144
hg19144
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2717649, esv2717650, esv2717497, esv2717652
Supporting Variants
SamplesSSM096
Known GenesNFATC1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6888671
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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