A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6883630



Internal ID9931887
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:13931758..14809415hg38UCSC Ensembl
Outerchr3:13973255..14850922hg19UCSC Ensembl
Cytoband3p25.1
Allele length
AssemblyAllele length
hg38877658
hg19877668
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2724945
Supporting Variants
SamplesSSM095
Known GenesC3orf20, CCDC174, CHCHD4, FGD5P1, GRIP2, LSM3, SLC6A6, TMEM43, TPRXL, XPC
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6883630
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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