A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6881354



Internal ID9930015
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:29748779..29975725hg38UCSC Ensembl
Outerchr6:29716556..29943502hg19UCSC Ensembl
Cytoband6p22.1
Allele length
AssemblyAllele length
hg38226947
hg19226947
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2731769, esv2731767
Supporting Variants
SamplesSSM094
Known GenesHCG4, HCG4B, HCG9, HLA-A, HLA-F-AS1, HLA-G, HLA-H, IFITM4P, LOC554223
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6881354
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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