A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6875667



Internal ID10271583
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:32485117..32570969hg38UCSC Ensembl
Outerchr6:32452894..32538746hg19UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg3885853
hg1985853
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2731844, esv2731846, esv2731839, esv2731841, esv2731842, esv2731843, esv2731835, esv2731837, esv2731845, esv2731836, esv2731838
Supporting Variants
SamplesSSM092
Known GenesHLA-DRB5, HLA-DRB6
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6875667
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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