A curated catalogue of human genomic structural variation




Variant Details

Variant: essv6871483



Internal ID9921133
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:21958685..22958369hg38UCSC Ensembl
Outerchr19:22141487..23141171hg19UCSC Ensembl
Cytoband19p12
Allele length
AssemblyAllele length
hg38999685
hg19999685
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2718352, esv2718349, esv2718337
Supporting Variants
SamplesSSM090
Known GenesLOC100996349, LOC440518, ZNF208, ZNF257, ZNF492, ZNF676, ZNF729, ZNF98, ZNF99
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)essv6871483
Frequency
Sample Size96
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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